Nussinov.orig.c File Reference

#include <string.h>
#include <math.h>
#include <stdlib.h>
#include <stdio.h>
#include <time.h>
#include <sys/time.h>

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Macros
#define	SCALAR_REPLACEMENT   0
#define	CHECK_DEPENDENCES   false
#define	eassert(EXPR)   eassert_func(__STRING(EXPR), EXPR)
#define	FOUR_WAY_MAX_WITH_REDUNDANCY   false
#define	ZERO_IF_NO_REDUNDANCY   0
#define	PRINT_SIZE   48 /* print for debugging if not bigger than this */
#define	VERBOSE   false
#define	VERBOSE_OUT   stdout
#define	SEED   42
#define	SLOWER   (CHECK_DEPENDENCES | VERBOSE)
#define	debug_N(x, y)   (N_array[x][y]) /* read secretly without triggering has_been_read */
#define	N(x, y)   (eassert(0 <= x && x < size && 0 <= y && y < size), N_array[x][y])
#define	MAX_N(x, y, v)   (eassert(0 <= x && x < size && 0 <= y && y < size), ((N_array[x][y]) = max_score(N_array[x][y], v)))
#define	MAX_N_DECLS()
#define	MAX_N_START(x, y)
#define	MAX_N_END(x, y)

Typedefs
typedef int	bool
	This version is stamped on May 10, 2016. More...
typedef int	base
typedef int	score

Functions
void	eassert_func (char *expr, bool value)
double	cur_time (void)
score	match (base b1, base b2)
score	max_score (score s1, score s2)
int	getint (char *prompt)
int	main (int argc, char *argv[])

Variables
const int	true = 1
const int	false = 0
char *	base_print [4] = { "A", "C", "G", "U" }
base	seq [MAX_SIZE]
score	N_array [MAX_SIZE][MAX_SIZE]

Macro Definition Documentation

CHECK_DEPENDENCES

#define CHECK_DEPENDENCES   false

Definition at line 59 of file Nussinov.orig.c.

debug_N

#define debug_N	(		x,
			y
	)		(N_array[x][y]) /* read secretly without triggering has_been_read */

Definition at line 135 of file Nussinov.orig.c.

Referenced by main().

eassert

#define eassert

(

EXPR

)

eassert_func(__STRING(EXPR), EXPR)

Definition at line 65 of file Nussinov.orig.c.

Referenced by main().

FOUR_WAY_MAX_WITH_REDUNDANCY

#define FOUR_WAY_MAX_WITH_REDUNDANCY   false

Definition at line 81 of file Nussinov.orig.c.

MAX_N

#define MAX_N	(		x,
			y,
			v
	)		(eassert(0 <= x && x < size && 0 <= y && y < size), ((N_array[x][y]) = max_score(N_array[x][y], v)))

Definition at line 145 of file Nussinov.orig.c.

Referenced by main().

MAX_N_DECLS

#define MAX_N_DECLS

(

)

Definition at line 162 of file Nussinov.orig.c.

Referenced by main().

MAX_N_END

#define MAX_N_END	(		x,
			y
	)

Definition at line 164 of file Nussinov.orig.c.

Referenced by main().

MAX_N_START

#define MAX_N_START	(		x,
			y
	)

Definition at line 163 of file Nussinov.orig.c.

Referenced by main().

N

#define N	(		x,
			y
	)		(eassert(0 <= x && x < size && 0 <= y && y < size), N_array[x][y])

Definition at line 138 of file Nussinov.orig.c.

Referenced by main().

PRINT_SIZE

#define PRINT_SIZE   48 /* print for debugging if not bigger than this */

Definition at line 90 of file Nussinov.orig.c.

Referenced by main().

SCALAR_REPLACEMENT

#define SCALAR_REPLACEMENT   0

Definition at line 55 of file Nussinov.orig.c.

SEED

#define SEED   42

Definition at line 105 of file Nussinov.orig.c.

Referenced by main().

SLOWER

#define SLOWER   (CHECK_DEPENDENCES | VERBOSE)

Definition at line 108 of file Nussinov.orig.c.

VERBOSE

#define VERBOSE   false

Definition at line 93 of file Nussinov.orig.c.

VERBOSE_OUT

#define VERBOSE_OUT   stdout

Definition at line 96 of file Nussinov.orig.c.

Referenced by main().

ZERO_IF_NO_REDUNDANCY

#define ZERO_IF_NO_REDUNDANCY   0

Definition at line 86 of file Nussinov.orig.c.

Referenced by main().

Typedef Documentation

base

typedef int base

Definition at line 120 of file Nussinov.orig.c.

bool

typedef int bool

This version is stamped on May 10, 2016.

Contact: Louis-Noel Pouchet <pouchet.ohio-state.edu> Tomofumi Yuki <tomofumi.yuki.fr>

Web address: http://polybench.sourceforge.net

Definition at line 50 of file Nussinov.orig.c.

score

typedef int score

Definition at line 121 of file Nussinov.orig.c.

Function Documentation

cur_time()

double cur_time

(

void

)

Definition at line 110 of file Nussinov.orig.c.

Referenced by main().

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eassert_func()

void eassert_func	(	char *	expr,
		bool	value
	)

Definition at line 66 of file Nussinov.orig.c.

References test_panda::stderr.

getint()

int getint

(

char *

prompt

)

Definition at line 169 of file Nussinov.orig.c.

References result, and test_panda::stderr.

Referenced by main().

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main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 194 of file Nussinov.orig.c.

References base_print, cur_time(), debug_N, eassert, getint(), k, match(), MAX_N, MAX_N_DECLS, MAX_N_END, MAX_N_START, MAX_SIZE, N, PRINT_SIZE, SEED, seq, test_panda::stderr, VERBOSE_OUT, and ZERO_IF_NO_REDUNDANCY.

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match()

score match ( base  b1, base  b2  )

inline

Definition at line 123 of file Nussinov.orig.c.

Referenced by HLSInstructionWriter::declareFunction(), and main().

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max_score()

score max_score ( score  s1, score  s2  )

inline

Definition at line 128 of file Nussinov.orig.c.

Variable Documentation

base_print

char* base_print[4] = { "A", "C", "G", "U" }

Definition at line 119 of file Nussinov.orig.c.

Referenced by main().

false

const int false = 0

Definition at line 52 of file Nussinov.orig.c.

N_array

score N_array[MAX_SIZE][MAX_SIZE]

Definition at line 134 of file Nussinov.orig.c.

seq

base seq[MAX_SIZE]

Definition at line 133 of file Nussinov.orig.c.

Referenced by __attribute__(), init_array(), main(), and chordal_coloring_register::RegisterBinding().

true

const int true = 1

Definition at line 51 of file Nussinov.orig.c.