nw.h File Reference

#include <stdio.h>
#include <stdlib.h>
#include "support.h"

Include dependency graph for nw.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Data Structures
struct	bench_args_t

Macros
#define	ALEN   128
#define	BLEN   128

Functions
void	needwun (char SEQA[ALEN], char SEQB[BLEN], char alignedA[ALEN+BLEN], char alignedB[ALEN+BLEN], int M[(ALEN+1) *(BLEN+1)], char ptr[(ALEN+1) *(BLEN+1)])

Macro Definition Documentation

ALEN

#define ALEN   128

Definition at line 5 of file nw.h.

Referenced by check_data(), data_to_input(), data_to_output(), input_to_data(), main(), needwun(), and output_to_data().

BLEN

#define BLEN   128

Definition at line 6 of file nw.h.

Referenced by check_data(), data_to_input(), data_to_output(), input_to_data(), main(), needwun(), and output_to_data().

Function Documentation

needwun()

void needwun	(	char	SEQA[ALEN],
		char	SEQB[BLEN],
		char	alignedA[ALEN+BLEN],
		char	alignedB[ALEN+BLEN],
		int	M[(ALEN+1) *(BLEN+1)],
		char	ptr[(ALEN+1) *(BLEN+1)]
	)

Definition at line 13 of file nw.c.

References ALEN, ALIGN, BLEN, GAP_SCORE, M, MATCH_SCORE, MAX, max, MISMATCH_SCORE, symmetry::row, SKIPA, and SKIPB.

Referenced by main(), and run_benchmark().

Here is the caller graph for this function: