nw.c File Reference

#include "nw.h"

Include dependency graph for nw.c:

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Macros
#define	MATCH_SCORE   1
#define	MISMATCH_SCORE   -1
#define	GAP_SCORE   -1
#define	ALIGN   '\\'
#define	SKIPA   '^'
#define	SKIPB   '<'
#define	MAX(A, B)   ( ((A)>(B))?(A):(B) )

Functions
void	needwun (char SEQA[ALEN], char SEQB[BLEN], char alignedA[ALEN+BLEN], char alignedB[ALEN+BLEN], int M[(ALEN+1) *(BLEN+1)], char ptr[(ALEN+1) *(BLEN+1)])

Macro Definition Documentation

ALIGN

#define ALIGN   '\\'

Definition at line 7 of file nw.c.

Referenced by needwun().

GAP_SCORE

#define GAP_SCORE   -1

Definition at line 5 of file nw.c.

Referenced by needwun().

MATCH_SCORE

#define MATCH_SCORE   1

Definition at line 3 of file nw.c.

Referenced by needwun().

MAX

#define MAX	(		A,
			B
	)		( ((A)>(B))?(A):(B) )

Definition at line 11 of file nw.c.

Referenced by needwun().

MISMATCH_SCORE

#define MISMATCH_SCORE   -1

Definition at line 4 of file nw.c.

Referenced by needwun().

SKIPA

#define SKIPA   '^'

Definition at line 8 of file nw.c.

Referenced by needwun().

SKIPB

#define SKIPB   '<'

Definition at line 9 of file nw.c.

Referenced by needwun().

Function Documentation

needwun()

void needwun	(	char	SEQA[ALEN],
		char	SEQB[BLEN],
		char	alignedA[ALEN+BLEN],
		char	alignedB[ALEN+BLEN],
		int	M[(ALEN+1) *(BLEN+1)],
		char	ptr[(ALEN+1) *(BLEN+1)]
	)

Definition at line 13 of file nw.c.

References ALEN, ALIGN, BLEN, GAP_SCORE, M, MATCH_SCORE, MAX, max, MISMATCH_SCORE, symmetry::row, SKIPA, and SKIPB.

Referenced by main(), and run_benchmark().

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